Package: island 0.2.11

island: Stochastic Island Biogeography Theory Made Easy

Develops stochastic models based on the Theory of Island Biogeography (TIB) of MacArthur and Wilson (1967) <doi:10.1023/A:1016393430551> and extensions. It implements methods to estimate colonization and extinction rates (including environmental variables) given presence-absence data, simulates community assembly, and performs model selection.

Authors:Vicente Jimenez [aut, cre], David Alonso [aut]

island_0.2.11.tar.gz
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island_0.2.11.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
island/json (API)

# Install 'island' in R:
install.packages('island', repos = c('https://vjontiveros.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • gsl– GNU Scientific Library (GSL)
Datasets:
  • alonso15 - Lakshadweep Archipelago coral fish community reassembly
  • idaho - Mapped plant community time series, Dubois, ID
  • lakshadweep - Lakshadweep Archipelago coral fish community reassembly data
  • lakshadweepPLUS - Lakshadweep Archipelago coral fish community reassembly data in a single data frame
  • simberloff - Simberloff and Wilson original defaunation experiment data

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

gsl

3.30 score 67 scripts 530 downloads 24 exports 0 dependencies

Last updated from:915b04dc7e. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK321
linux-devel-x86_64OK181
source / vignettesOK272
linux-release-arm64OK291
linux-release-x86_64OK147
macos-release-arm64OK246
macos-release-x86_64OK613
macos-oldrel-arm64OK159
macos-oldrel-x86_64OK384
windows-develOK172
windows-releaseOK148
windows-oldrelOK142
wasm-releaseOK103

Exports:akaikeicakaikeiccall_environmental_fitcetotranscustom_environmental_fitdata_generationgreedy_environmental_fitibd_modelsirregular_multiple_datasetsirregular_single_datasetmss_cedpNLL_envNLL_imdNLL_isdNLL_rssnull_modelPA_simulationr_squaredrates_calculatorregular_sampling_schemesimulated_modelsss_cedpupgma_model_selectionweight_of_evidence

Dependencies:

Colonization and extinction rates for IBD models
Inmigration, Birth and Death stochastic models. | Simulation of stochastic population dynamics | Colonization and extinction rates derived from the individual-based, stochastic dynamics of the population | Adding detectability
Rendered fromIBDmodels.Rmdusingknitr::rmarkdown

Last update: 2023-11-30
Started: 2018-05-09

Estimating imperfect detectability
Imperfect detectability. | Data entry | Estimating colonization and extinction rates with imperfect detectability | Model selection grouping
Rendered fromdetectability.Rmdusingknitr::rmarkdown

Last update: 2022-10-05
Started: 2018-05-09

island: the Theory of Island Biogeography made easy
Introduction | The Theory of Island Biogeography | Aims of this package | Data entry | Likelihood and estimating colonisation and extinction rates | The Equilibrium Theory of Island Biogeography (ETIB) | Rates Vs Transition Probabilities | Regular sampling schemes | Estimating colonization and extinction rates | Estimating Confidence Intervals | Likelihood profiles | A few words on model selection | Simulating Colonization and Extinction Dynamics | Irregular Sampling Schemes | Heuristic Vs Semianalytical Methods | Single dataset | Multiple datasets | A short example | Environmental fit | Conclusion
Rendered fromisland.Rmdusingknitr::rmarkdown

Last update: 2019-01-21
Started: 2018-05-09