Package: island 0.2.10

island: Stochastic Island Biogeography Theory Made Easy

Develops stochastic models based on the Theory of Island Biogeography (TIB) of MacArthur and Wilson (1967) <doi:10.1023/A:1016393430551> and extensions. It implements methods to estimate colonization and extinction rates (including environmental variables) given presence-absence data, simulates community assembly, and performs model selection.

Authors:Vicente Jimenez [aut, cre], David Alonso [aut]

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island.pdf |island.html✨
island/json (API)
NEWS

# Install 'island' in R:
install.packages('island', repos = c('https://vjontiveros.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • gsl– GNU Scientific Library (GSL)
Datasets:
  • alonso15 - Lakshadweep Archipelago coral fish community reassembly
  • idaho - Mapped plant community time series, Dubois, ID
  • lakshadweep - Lakshadweep Archipelago coral fish community reassembly data
  • lakshadweepPLUS - Lakshadweep Archipelago coral fish community reassembly data in a single data frame
  • simberloff - Simberloff and Wilson original defaunation experiment data

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

24 exports 0.09 score 0 dependencies 40 scripts 370 downloads

Last updated 10 months agofrom:0aaf50103d. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 14 2024
R-4.5-win-x86_64OKSep 14 2024
R-4.5-linux-x86_64OKSep 14 2024
R-4.4-win-x86_64OKSep 14 2024
R-4.4-mac-x86_64OKSep 14 2024
R-4.4-mac-aarch64OKSep 14 2024
R-4.3-win-x86_64OKSep 14 2024
R-4.3-mac-x86_64OKSep 14 2024
R-4.3-mac-aarch64OKSep 14 2024

Exports:akaikeicakaikeiccall_environmental_fitcetotranscustom_environmental_fitdata_generationgreedy_environmental_fitibd_modelsirregular_multiple_datasetsirregular_single_datasetmss_cedpNLL_envNLL_imdNLL_isdNLL_rssnull_modelPA_simulationr_squaredrates_calculatorregular_sampling_schemesimulated_modelsss_cedpupgma_model_selectionweight_of_evidence

Dependencies:

Colonization and extinction rates for IBD models

Vicente J. Ontiveros & David Alonso

Rendered fromIBDmodels.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2023-11-30
Started: 2018-05-09

Estimating imperfect detectability

Vicente J. Ontiveros & David Alonso

Rendered fromdetectability.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2022-10-05
Started: 2018-05-09

island: the Theory of Island Biogeography made easy

Vicente J. Ontiveros & David Alonso

Rendered fromisland.Rmdusingknitr::rmarkdownon Sep 14 2024.

Last update: 2019-01-21
Started: 2018-05-09